In version 4.9.0.1, some users have experienced an issue with gift attributes where the columns are populating incorrectly. This will be resolved in the next Importacular release, but in the meantime, there are two workarounds.
1) Rather than import to batch, import directly. While we do understand that this may not fall in line with internal policies for all organisations, it will correctly add the data to the Raiser's Edge.
2) Re-order the Gift attributes in your template so that they are in the same order as the columns in your batch.